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GM02796 LCL from B-Lymphocyte

Description:

GALACTOSEMIA
GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; GALT

Affected:

Yes

Sex:

Male

Age:

15 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Images
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Class Disorders of Carbohydrate Metabolism
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race Black/African American
Family Member 1
Relation to Proband proband
Confirmation Clinical summary/Case history
Species Homo sapiens
Common Name Human
Remarks See GM00052 and GM01908 (Fibroblast); no detectable transferase activity in RBCs and fibroblasts; donor subject is a compound heterozygote: one allele has a C>T transition at nucleotide 404 in exon 5 of the GALT gene (c.404C>T) resulting in the substitution of leucine for serine at codon 135 [Ser135Leu(S135L)]; the second allele has a T>C transition at nucleotide 512 in exon 6 (c.512T>C) resulting in the substitution of serine for phenylalanine at codon 171 [Phe171Ser(F171S)]; donor subject also has two silent polymorphisms: c.876G>A [Thr292Thr(T292T)] and c.945T>C [His315His(H315H)]

Characterizations

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IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by Nucleoside Phosphorylase Isoenzyme Electrophoresis
 
UDP-glucose--hexose-1-phosphate uridylyltransferase According to the submitter, biochemical test results for this subject showed decreased enzyme activity. EC Number: 2.7.7.12; 0% activity.
 
Gene GALT
Chromosomal Location 9p13
Allelic Variant 1 606999.0010; GALACTOSEMIA
Identified Mutation SER135LEU; Baker et al. (1966) described black patients with classic galactosemia who lacked GALT activity in their erythrocytes and yet were able to oxidize a substantial amount of labeled galactose to CO2 in vivo (Segal and Cuatrecasas, 1968). Liver and intestinal mucosa biopsy specimens from these patients expressed about 10% of normal GALT activity. This apparent tissue specificity of GALT enzyme expression was labeled the 'negro variant' of galactosemia. Lai et al. (1996) demonstrated that the underlying mutation is a C-to-T transition at bp1158 of the GALT gene that results in a serine-to-leucine substitution at codon 135 (S135L). Population screening was performed using a restriction enzyme assay; the mutation abolishes a TAQI recognition site. The S135L mutation was not found in 84 white patients with homozygous galactosemia or in 87 white control subjects without galactosemia. One S135L allele was found out of the 100 GALT alleles in 50 black subjects; 16 out of 32 alleles in 16 galactosemic patients were of the S135L type. (Also in 1 patient with galactosemia, the S135L mutation was maternal in origin; the patient had a black mother and a white father.)
 
Gene GALT
Chromosomal Location 9p13
Allelic Variant 1 T292T; GALACTOSEMIA (POLYMORPHISM)
Identified Mutation THR292THR
 
Gene GALT
Chromosomal Location 9p13
Allelic Variant 1 H315H; GALACTOSEMIA (POLYMORPHISM)
Identified Mutation HIS315HIS
 
Gene GALT
Chromosomal Location 9p13
Allelic Variant 2 606999.0008; GALACTOSEMIA
Identified Mutation PHE171SER; Reichardt et al. [Biochemistry 31: 5430-5433 (1992)] characterized two galactosemia (230400) mutations, L74P (606999.0007) and F171S, and one polymorphism, S135L, in the GALT gene. Both mutations resulted in reduced enzymatic activity on expression studies, whereas the polymorphism resulted in near normal activity. Both mutations involved evolutionarily conserved residues, while the polymorphism occurred in a nonconserved domain.

Phenotypic Data

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Remarks See GM00052 and GM01908 (Fibroblast); no detectable transferase activity in RBCs and fibroblasts; donor subject is a compound heterozygote: one allele has a C>T transition at nucleotide 404 in exon 5 of the GALT gene (c.404C>T) resulting in the substitution of leucine for serine at codon 135 [Ser135Leu(S135L)]; the second allele has a T>C transition at nucleotide 512 in exon 6 (c.512T>C) resulting in the substitution of serine for phenylalanine at codon 171 [Phe171Ser(F171S)]; donor subject also has two silent polymorphisms: c.876G>A [Thr292Thr(T292T)] and c.945T>C [His315His(H315H)]

Publications

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Reichardt JK, Molecular analysis of 11 galactosemia patients. Nucleic Acids Res19:7049-52 1991
PubMed ID: 1766867
 
Reichardt JK, Woo SL, Molecular basis of galactosemia: mutations and polymorphisms in the gene encoding human galactose-1-phosphate uridylyltransferase [published erratum appears in Proc Natl Acad Sci U S A 1991 Aug 15;88(16):7457] Proc Natl Acad Sci U S A88:2633-7 1991
PubMed ID: 2011574

External Links

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dbSNP dbSNP ID: 15929
Gene Cards GALT
Gene Ontology GO:0003982 UTP-hexose-1-phosphate uridylyltransferase activity
GO:0006012 galactose metabolism
GO:0008108 UDP-glucose-hexose-1-phosphate uridylyltransferase activity
GO:0016740 transferase activity
NCBI Gene Gene ID:2592
NCBI GTR 230400 GALACTOSEMIA I; GALAC1
606999 GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; GALT
OMIM 230400 GALACTOSEMIA I; GALAC1
606999 GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; GALT
Omim Description GALACTOSE-1-PHOSPHATE URIDYLTRANSFERASE DEFICIENCY
  GALACTOSEMIA
  GALT DEFICIENCYGALACTOSE-1-PHOSPHATE URIDYLTRANSFERASE; GALT, INCLUDED

Images

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Culture Protocols

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Split Ratio 1:3
Temperature 37 C
Percent CO2 5%
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
Commercial/For-profit:
$373.00USD
Academic/Non-profit/Government:
$216.00USD
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