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GM27995
Fibroblast
from
Skin, Skin
Description:
ENCEPHALOPATHY OF CHILDHOOD (LENNOX-GASTAUT SYNDROME)
THAP DOMAIN CONTAINING 12
Affected:
No
Sex:
Female
Age:
32
YR
(At Sampling)
Sample Description
Overview
Characterizations
Phenotypic Data
External Links
Culture Protocols
Overview
Repository
NIGMS Human Genetic Cell Repository
Subcollection
Heritable Diseases
PIGI Consented Sample
Biopsy Source
Skin
Cell Type
Fibroblast
Tissue Type
Skin
Transformant
Untransformed
Sample Source
Fibroblast from Skin, Skin
Race
White
Ethnicity
Not Hispanic/Latino
Ethnicity
German
Country of Origin
USA
Family Member
3
Family History
N
Relation to Proband
mother
Confirmation
Molecular characterization before cell line submission to CCR
Species
Homo
sapiens
Common Name
Human
Remarks
Whole genome sequencing revealed a heterozygous mutation in exon 3 of THAP12 (NM_004705) resulting in a missense variant c.312delA (p.Glu105AsnfsTer2); reads were aligned to human genome build 38 (hg38); 11:76360961 CT>C (hg38); 11:76072005 CT>C (hg19). Fibro is GM27995; affected daughter #1 is GM27991 (LCL) and GM27993 (fibro); affected daughter #2 is GM27988 (LCL) and GM27990 (fibro).
Characterizations
PDL at Freeze
7.59
Passage Frozen
3
IDENTIFICATION OF SPECIES OF ORIGIN
Species of Origin Confirmed by LINE assay
Gene
THAP12
Chromosomal Location
11q13.5
Allelic Variant 1
p.Glu105AsnfsTer2; ENCEPHALOPATHY OF CHILDHOOD (LENNOX-GASTAUT SYNDROME)
Identified Mutation
c.312delA (p.Glu105AsnfsTer2)
Phenotypic Data
Remarks
Whole genome sequencing revealed a heterozygous mutation in exon 3 of THAP12 (NM_004705) resulting in a missense variant c.312delA (p.Glu105AsnfsTer2); reads were aligned to human genome build 38 (hg38); 11:76360961 CT>C (hg38); 11:76072005 CT>C (hg19). Fibro is GM27995; affected daughter #1 is GM27991 (LCL) and GM27993 (fibro); affected daughter #2 is GM27988 (LCL) and GM27990 (fibro).
External Links
Gene Cards
THAP12
Gene Ontology
GO:0003677 DNA binding
GO:0006445 regulation of translation
GO:0006950 response to stress
GO:0007165 signal transduction
GO:0008285 negative regulation of cell proliferation
GO:0046983 protein dimerization activity
NCBI Gene
Gene ID:5612
NCBI GTR
606369 MACROCEPHALY AND EPILEPTIC ENCEPHALOPATHY
607374 PRKR INHIBITOR, REPRESSOR OF; PRKRIR
OMIM
606369 MACROCEPHALY AND EPILEPTIC ENCEPHALOPATHY
607374 PRKR INHIBITOR, REPRESSOR OF; PRKRIR
Omim Description
ENCEPHALOPATHY OF CHILDHOOD
Culture Protocols
Cumulative PDL at Freeze
7.59
Passage Frozen
3
Split Ratio
1:3
Temperature
37 C
Percent CO2
5%
Percent O2
AMBIENT
Medium
Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum
15% fetal bovine serum Not inactivated
Supplement
-
Pricing
Commercial/For-profit:
$373.00
USD
Academic/Non-profit/Government:
$216.00
USD
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