HAPMAPPT07 96 WELL PLATE OF DNA SAMPLES

Description: INTERNATIONAL HAPMAP PROJECT - AFRICAN ANCESTRY IN SW USA

Aliquot Size: 50 µg each

Sex: Males: 41 Females: 49

Brief Description: The HAPMAPPT07 plate, from People with African Ancestry in the Southwestern United States includes a set of 11 trios, 24 duos and 9 singletons (90 samples). In addition, there are 5 duplicated samples and 1 buffer control. The concentration of each DNA sample to be plated is normalized and then this concentration is verified. The DNA concentration is 250 ng/µl and there are 50 µg of DNA per well. Once all samples are in place, a DNA fingerprint is determined for each sample to verify the identity on the plate. The specific position on the plates has been optimized by NHGRI to reduce any possible errors in sample identity during the genotyping process. The positions of the 5 duplicated samples and 1 buffer control are indicated by gray shading.
Wheeler HE, Gorsic LK, Welsh M, Stark AL, Gamazon ER, Cox NJ, Dolan ME, Genome-wide local ancestry approach identifies genes and variants associated with chemotherapeutic susceptibility in African Americans PloS one6:e21920 2011
PubMed ID: 21755009
 
Pemberton, Trevor J., Wang, Chaolong, Li, Jun Z., and Rosenberg, Noah A., Inference of unexpected genetic relatedness among individuals in HapMap phase III Am J Hum Genet87:457-464 2010
PubMed ID: 20869033
 
Manolio TA, Brooks LD, Collins FS, A HapMap harvest of insights into the genetics of common disease The Journal of clinical investigation118:1590-605 2008
PubMed ID: 18451988
 
O'Shaughnessy KM, HapMap, pharmacogenomics, and the goal of personalized prescribing British journal of clinical pharmacology61:783-6 2006
PubMed ID: 16722846

Catalog IDSexFamilyRelationship
NA20363Female2496mother
NA20364Female2496child
NA20359Female2495mother
NA20360Male2495child
NA20357Female2494mother
NA20356Male2494father
NA20358Male2494child
NA20349Male2492father
NA20350Male2492child
NA20346Male2490father
NA20347Male2490child
NA20344Female2489mother
NA20345Male2489child
NA20342Male2488father
NA20343Male2488child
NA20336Female2485mother
NA20337Female2485child
NA20334Female2484mother
NA20335Male2484child
NA20332Female2483mother
NA20333Female2483child
NA20322Female2481sister
NA20317Female2480mother
NA20319Female2480child
NA20314Female2479mother
NA20316Male2479child
NA20301Female2477mother
NA20302Male2477child
NA20299Female2476mother
NA20300Female2476child
NA20296Female2475mother
NA20297Male2475child
NA20294Female2474mother
NA20295Male2474child
NA20292Female2472child
NA20291Male2472father
NA20289Female2471mother
NA20290Female2471child
NA20287Female2470mother
NA20288Male2470child
NA20282Female2469mother
NA20284Male2469child
NA20278Male2467father
NA20279Male2467child
NA20276Female2466mother
NA20277Female2466child
NA20127Female2446mother
NA20128Female2446child
NA20126Male2446father
NA19985Female2437mother
NA19714Female2437child
NA19713Female2436mother
NA19983Female2436child
NA19982Male2436father
NA19921Female2433mother
NA20129Female2433child
NA19920Male2433father
NA19917Female2431mother
NA19916Male2431father
NA19918Male2431child
NA19914Female2430mother
NA19915Male2430child
NA19909Female2427mother
NA19908Male2427father
NA19919Male2427child
NA19904Male2426father
NA19901Female2425mother
NA19902Female2425child
NA19900Male2425father
NA19835Female2424mother
NA19836Female2424child
NA19834Male2424father
NA19819Female2418mother
NA19818Male2418father
NA19828Male2418child
NA19707Female2369mother
NA19708Female2369child
NA19704Female2368mother
NA19703Male2368father
NA19705Male2368child
NA19701Female2367mother
NA19700Male2367father
NA19702Male2367child
NA19625Female2357child
NA19712Female proband
NA20341Female proband
NA19711Male proband
NA20281Male proband
NA20340Male proband
NA20348Male proband