HAPMAPPT04 96 WELL PLATE OF DNA SAMPLES

Description: INTERNATIONAL HAPMAP PROJECT - YORUBA IN IBADAN, NIGERIA (II)

Aliquot Size: 50 µg each

Sex: Males: 47 Females: 43

Brief Description: The HAPMAPPT04 plate, from the Yoruba in Ibadan, Nigeria includes a set of 28 trios, 2 duos, and 2 singletons with 90 samples. In addition, there are 5 duplicated samples and 1 buffer control. The concentration of each DNA sample to be plated is normalized and then this concentration is verified. The DNA concentration is 250 ng/µl and there are 50 µg of DNA per well. Once all samples are in place, a DNA fingerprint is determined for each sample to verify the identity on the plate. The specific position on the plates has been optimized by NHGRI to reduce any possible errors in sample identity during the genotyping process. The positions of the 5 duplicated samples and 1 buffer control are indicated by gray shading.
Wheeler HE, Gorsic LK, Welsh M, Stark AL, Gamazon ER, Cox NJ, Dolan ME, Genome-wide local ancestry approach identifies genes and variants associated with chemotherapeutic susceptibility in African Americans PloS one6:e21920 2011
PubMed ID: 21755009
 
Gamazon ER, Ziliak D, Im HK, Lacroix B, Park DS, Cox NJ, Huang RS, Genetic Architecture of MicroRNA Expression: Implications for the Transcriptome and Complex Traits American journal of human genetics90:1046-63 2011
PubMed ID: 22658545
 
Pemberton, Trevor J., Wang, Chaolong, Li, Jun Z., and Rosenberg, Noah A., Inference of unexpected genetic relatedness among individuals in HapMap phase III Am J Hum Genet87:457-464 2010
PubMed ID: 20869033
 
Leak TS, Langefeld CD, Keene KL, Gallagher CJ, Lu L, Mychaleckyj JC, Rich SS, Freedman BI, Bowden DW, Sale MM, Chromosome 7p linkage and association study for diabetes related traits and type 2 diabetes in an African-American population enriched for nephropathy BMC medical genetics11:22 2009
PubMed ID: 20144192
 
Manolio TA, Brooks LD, Collins FS, A HapMap harvest of insights into the genetics of common disease The Journal of clinical investigation118:1590-605 2008
PubMed ID: 18451988

Catalog IDSexFamilyRelationship
NA19247FemaleY120mother
    
NA19248MaleY120father
    
NA19249MaleY120child
    
NA19235FemaleY116mother
    
NA19237FemaleY116child
    
NA19236MaleY116father
    
NA19190FemaleY111mother
    
NA19189MaleY111father
    
NA19191MaleY111child
    
NA19214FemaleY110mother
    
NA19215FemaleY110child
    
NA19213MaleY110father
    
NA19118FemaleY100mother
    
NA19117MaleY100father
    
NA19174MaleY100child
    
NA19257FemaleY092mother
    
NA19256MaleY092father
    
NA19258MaleY092child
    
NA19114FemaleY079mother
    
NA19115FemaleY079child
    
NA19113MaleY079father
    
NA19147FemaleY075mother
    
NA19148FemaleY075child
    
NA19146MaleY075father
    
NA19149FemaleY073mother
    
NA19151FemaleY073child
    
NA19150MaleY073father
    
NA19122FemaleY061mother
    
NA19121MaleY061father
    
NA19123MaleY061child
    
NA19225FemaleY057mother
    
NA19226MaleY057father
    
NA19224MaleY057child
    
NA19182FemaleY052mother
    
NA19183FemaleY052child
    
NA19181MaleY052father
    
NA19176FemaleY044mother
    
NA19175MaleY044father
    
NA19177MaleY044child
    
NA19095FemaleY041mother
    
NA19097FemaleY041child
    
NA19096MaleY041father
    
NA19185FemaleY039mother
    
NA19184MaleY039father
    
NA19186MaleY039child
    
NA19179FemaleY038mother
    
NA19180FemaleY038child
    
NA19178MaleY038father
    
NA18933FemaleY036mother
    
NA18934MaleY036father
    
NA18935MaleY036child
    
NA19197FemaleY035mother
    
NA19199FemaleY035child
    
NA19198MaleY035father
    
NA18924FemaleY033mother
    
NA18923MaleY033father
    
NA18925MaleY033child
    
NA18916FemaleY030mother
    
NA18930FemaleY030child
    
NA18917MaleY030father
    
NA18909FemaleY027mother
    
NA18910MaleY027father
    
NA18911MaleY027child
    
NA18907FemaleY025mother
    
NA19252MaleY025child
    
NA18873FemaleY019mother
    
NA18875FemaleY019child
    
NA18874MaleY019father
    
NA18520FemaleY014mother
    
NA18518FemaleY014child
    
NA18519MaleY014father
    
NA18511FemaleY010mother
    
NA18509MaleY010child
    
NA18867FemaleY007mother
    
NA18868MaleY007father
    
NA18869MaleY007child
    
NA19108FemaleY006mother
    
NA19109FemaleY006child
    
NA19107MaleY006father
    
NA18499FemaleY003mother
    
NA18498MaleY003father
    
NA18497MaleY003child
    
NA18489FemaleY002mother
    
NA18487MaleY002father
    
NA18485MaleY002child
    
NA18488FemaleY001mother
    
NA18484FemaleY001child
    
NA18486MaleY001father
    
NA18510Male proband
NA18908Male proband
NA18510Male proband
NA18908Male proband